Fitness data for PP_2542 in Pseudomonas putida KT2440

Transcriptional regulator, GntR family
SEED: Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source 5-Aminovaleric (N) -1.0 -6.3 compare
carbon source 4-Aminobutyric 10 mM (C) -1.0 -3.8 compare
nitrogen source 5-Aminovaleric (N) -1.0 -5.9 compare
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.9 -3.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 -2.1 compare
nitrogen source nitrogen source nitrite 0.5mM -0.6 -2.5 compare
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.6 -2.1 compare
nitrogen source 4-aminobutyric (N) -0.5 -3.8 compare
pH D-Glucose (C) pH 7 -0.5 -3.2 compare
nitrogen source 4-aminobutyric (N) -0.5 -3.4 compare
pH Growth at pH6 and (C) D-Glucose -0.5 -1.9 compare
phage PUT8 MOI 0.1 -0.5 -2.1 compare
carbon source Valeric (C) -0.4 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.1 compare
pH D-Glucose (C) pH 6.5 -0.4 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.4 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -1.5 compare
nitrogen source Propandiamine (N) +0.5 +1.7 compare
nitrogen source Propandiamine (N) +1.0 +2.6 compare