Fitness data for PP_2539 in Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: Transcriptional regulator, LysR family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
phage P. putida Sci Big MOI 0.1 -1.3 -2.2 compare
carbon source D-Glucose (C) -1.1 -2.3 compare
carbon source D-Lysine 10 mM (C) -1.0 -3.7 compare
temperature Growth at 25C; with MOPS -1.0 -3.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.0 -3.2 compare
pH Growth at pH6 and (C) D-Glucose -0.9 -2.1 compare
temperature shift Temperature shift 30_to_34; with MOPS -0.9 -1.7 compare
carbon source 3-Hydroxyhexanoic (C) -0.9 -3.5 compare
pH Growth at pH9 and (C) Trisodium citrate -0.9 -2.3 compare
temperature Growth at 34C -0.8 -2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -1.8 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.8 -2.0 compare
carbon source carbon source 4-vinylphenol 0.01 mM -0.8 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.2 compare
phage P. putida Missley MOI 0.1 -0.8 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +3.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.9 +3.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.0 +1.6 compare