Fitness data for PP_2534 in Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: Cyn operon transcriptional activator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -0.9 -2.1 compare
phage P. putida Sci Big MOI 0.1 -0.7 -1.7 compare
carbon source ferulate (C); with MOPS -0.7 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6 -2.1 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.6 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.7 compare
phage P. put South MOI 1 -0.5 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 -1.5 compare
carbon source Delta-Undecalactone (C) -0.4 -2.6 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.4 -1.6 compare
carbon source Vanillic Acid (C) -0.4 -2.1 compare
pH Growth at pH7 and (C) D-Glucose +0.4 +1.7 compare
carbon source Trisodium citrate (C) +0.5 +1.4 compare
nitrogen source NAG (N); with MOPS +0.5 +1.7 compare
nitrogen source Urea (N) +0.5 +2.3 compare
carbon source D-Glucose (C); with MOPS +0.5 +1.8 compare
temperature Growth at 30C; with MOPS +0.6 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8 +2.3 compare