Fitness data for PP_2516 in Pseudomonas putida KT2440

HTH-type transcriptional regulator GalR
SEED: Transcriptional regulator, LysR family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.0 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -2.7 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.7 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.7 -1.7 compare
stress Growth with Chloride 500 mM; with MOPS -0.7 -2.3 compare
stress Growth with Chloride 500 mM; with MOPS -0.6 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6 -1.8 compare
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 2 -0.6 -2.7 compare
carbon source carbon source 4-vinylphenol 0.01 mM -0.6 -2.0 compare
carbon source acetate (C) -0.6 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.6 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.6 -2.7 compare
stress R2A with Fusaric 120 ug/mL -0.6 -2.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.9 compare
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1 -0.6 -2.8 compare
pH Growth at pH6 and (C) Trisodium citrate +0.6 +1.9 compare
nitrogen source Urea (N) +0.6 +2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 +2.8 compare
stress 1-Pentanol 0.3 vol% +0.7 +2.7 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.7 +2.0 compare