Fitness data for PP_2436 in Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: Transcriptional regulator, LysR family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source Delta-Undecalactone (C) -6.6 -7.9 compare
carbon source Delta-Undecalactone (C) -6.2 -9.5 compare
carbon source Delta-Decalactone (C) -5.5 -9.1 compare
carbon source Delta-Nonalactone (C) -3.8 -7.4 compare
carbon source Delta-Decalactone (C) -3.7 -6.5 compare
carbon source 4-Hydroxyvalerate (C) (40mM) -2.2 -7.0 compare
carbon source 4-Hydroxyvalerate (C) (40mM) -2.1 -6.2 compare
carbon source 5-Hydroxydodecanoate (C) -1.7 -5.2 compare
carbon source Delta-Dodecalactone (C) -1.3 -4.8 compare
carbon source 5-Hydroxydodecanoate (C) -1.2 -5.6 compare
carbon source Delta-Dodecalactone (C) -1.2 -4.8 compare
pH Growth at pH7 and (C) Trisodium citrate -0.8 -2.4 compare
carbon source ferulate (C); with MOPS -0.7 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.7 -1.9 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.6 -2.1 compare
nitrogen source nitrogen source nitrate 5mM -0.6 -2.4 compare
pH Growth at pH6 and (C) Trisodium citrate -0.6 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.7 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.0 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.2 +2.0 compare