Fitness data for PP_2423 in Pseudomonas putida KT2440

Fe(2+)/alpha-ketoglutarate-dependent dioxygenase
SEED: Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO
KEGG: beta-hydroxylase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -0.7 -1.8 compare
phage P. putida Sci Big MOI 0.1 -0.7 -2.1 compare
nitrogen source NAG (N); with MOPS -0.6 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -2.2 compare
nitrogen source Propandiamine (N) -0.6 -2.1 compare
phage P. put PUT 10 MOI 0.1 -0.5 -2.5 compare
stress R2A with Fusaric 120 ug/mL -0.5 -2.5 compare
phage P. putida PUT 7 MOI 1 -0.5 -1.8 compare
nitrogen source Ammonium chloride (N) +0.5 +1.8 compare
temperature shift Temperature shift 10_to_30; with MOPS +0.5 +2.1 compare
carbon source Trisodium citrate (C) +0.5 +1.7 compare
carbon source ferulate (C); with MOPS +0.5 +1.9 compare
temperature shift Temperature shift 30_to_25 +0.5 +2.1 compare
carbon source 4-Hydroxyvalerate (C) (40mM) +0.5 +2.8 compare
nitrogen source nitrogen source nitrate 20mM +0.5 +2.6 compare
pH Growth at pH9 and (C) Trisodium citrate +0.5 +2.5 compare
nitrogen source Urea (N) +0.5 +2.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.6 +2.0 compare
carbon source ferulate (C); with MOPS +0.6 +2.1 compare
temperature shift Temperature shift 10_to_34; with MOPS +0.6 +2.7 compare