Fitness data for PP_2422 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: carboxymuconolactone decarboxylase family protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.7 -3.6 compare
carbon source Myristic (C) -1.4 -1.7 compare
nitrogen source NAG (N); with MOPS -1.2 -1.4 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 -1.1 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9 -1.3 compare
pH D-Glucose (C) pH 6 -0.8 -1.6 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.8 -1.6 compare
pH Growth at pH6 and (C) D-Glucose -0.8 -1.8 compare
stress Growth with Chloride 500 mM; with MOPS -0.8 -1.4 compare
stress R2A with Fusaric 240 ug/mL -0.7 -1.7 compare
pH Growth at pH7 and (C) D-Glucose -0.7 -1.2 compare
temperature Growth at 25C -0.7 -2.7 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.7 -2.3 compare
carbon source ferulate (C); with MOPS -0.7 -1.8 compare
pH Growth at pH8 and (C) Trisodium citrate -0.7 -2.2 compare
nitrogen source nitrite (N) -0.7 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +1.9 compare
nitrogen source nitrogen source nitrite 1mM +1.0 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +1.8 compare