Fitness data for PP_2406 in Pseudomonas putida KT2440

putative quinate/shikimate dehydrogenase
SEED: Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25)
KEGG: shikimate dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source Quinic Acid (C) -2.1 -6.8 compare
carbon source Quinic Acid (C) -2.0 -7.1 compare
phage P. putida PUT 7 MOI 1 -1.3 -2.9 compare
carbon source ferulate (C); with MOPS -1.3 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -2.0 compare
carbon source carbon source D-Glucose 55.5 mM -0.8 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -3.3 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.7 -2.5 compare
phage P. putida Sci small MOI 0.1 -0.7 -1.3 compare
carbon source carbon source 3-O-methyl-glucose 10 mM -0.7 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.7 -1.1 compare
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.6 -2.1 compare
pH Growth at pH7 and (C) Trisodium citrate -0.6 -1.2 compare
nitrogen source Ammonium chloride and TNT (N) +0.7 +1.8 compare
temperature Growth at 25C +0.7 +1.6 compare
carbon source L-Leucine (C) +0.7 +2.6 compare
nitrogen source Ammonium chloride (N) +0.7 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 +1.5 compare