Fitness data for PP_2264 in Pseudomonas putida KT2440

putative Sugar ABC transporter, periplasmic sugar-binding protein
SEED: Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)
KEGG: multiple sugar transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
temperature Growth at 30C; with MOPS -0.5 -2.2 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay -0.4 -2.5 compare
nitrogen source DL-2-Aminobutyric (N) -0.4 -2.8 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.4 -2.0 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.4 -1.8 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.3 -2.0 compare
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM -0.3 -2.0 compare
phage P. put PUT 10 MOI 10 +0.3 +2.2 compare
phage P. putida PUT10 MOI 10 +0.3 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +1.5 compare
stress R2A with Fusaric 240 ug/mL +0.4 +2.2 compare
phage P. putida South MOI 0.1 +0.4 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.1 compare
stress R2A with Fusaric 240 ug/mL +0.4 +2.0 compare
phage P. putida South MOI 10 +0.5 +2.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.2 compare
pH Growth at pH7 and (C) Trisodium citrate +0.5 +2.2 compare
phage P. putida Sci Big MOI 0.1 +0.6 +2.6 compare