Fitness data for PP_2261 in Pseudomonas putida KT2440

Sugar ABC transporter, ATP-binding protein
SEED: Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)
KEGG: multiple sugar transport system ATP-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -0.8 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8 -2.5 compare
nitrogen source D-2-Aminobutyric (N) -0.7 -2.7 compare
carbon source butyrate (C) -0.6 -2.4 compare
nitrogen source Propandiamine (N) -0.5 -1.8 compare
carbon source Butyl stearate (C) -0.5 -3.1 compare
carbon source L-Glutamic (C) -0.5 -2.4 compare
carbon source 4-Methyl-2-oxopentanoic (C) -0.5 -2.5 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -2.5 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. +0.5 +2.7 compare
nitrogen source nitrite (N) +0.5 +1.7 compare
carbon source carbon source 4-vinylphenol 0.1 mM +0.5 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5 +1.6 compare
temperature shift Temperature shift 30_to_21; with MOPS +0.5 +2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.6 +2.4 compare
temperature shift Temperature shift 10_to_25; with MOPS +0.6 +2.5 compare
pH Growth at pH6 and (C) D-Glucose +0.7 +2.7 compare
carbon source carbon source D-Glucose 55.5 mM +0.7 +2.0 compare
nitrogen source 2,6-diaminopimelic (N) +0.9 +3.2 compare