Fitness data for PP_2246 in Pseudomonas putida KT2440

catabolic D-arginine dehydrogenase, FAD-dependent
SEED: Sarcosine oxidase beta subunit (EC 1.5.3.1)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
pH Growth at pH7 and (C) Trisodium citrate -0.6 -2.2 compare
carbon source 4-Methyl-2-oxopentanoic (C) -0.5 -2.1 compare
stress R2A with Fusaric 240 ug/mL -0.5 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -1.9 compare
pH Growth at pH9 and (C) Trisodium citrate -0.4 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -1.7 compare
no stress control Growth with no stress -0.4 -1.8 compare
nitrogen source 2,6-diaminopimelic (N) -0.4 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4 -1.7 compare
carbon source L-Lysine 10 mM (C) -0.4 -2.1 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay -0.4 -2.1 compare
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL +0.4 +2.4 compare
nitrogen source D-2-Aminobutyric (N) +0.4 +1.1 compare
pH pH 4 +0.4 +2.3 compare
phage P. putida Sci small MOI 0.1 +0.4 +1.4 compare
nitrogen source Propiolactam (N) +0.5 +2.3 compare
stress Growth with Chloride 500 mM; with MOPS +0.5 +2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 +2.6 compare