Fitness data for PP_2107 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Thiol-disulfide isomerase and thioredoxins

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.9)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -4.2 -1.4 compare
phage P. putida South MOI 10 -4.0 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -3.9 -1.2 compare
carbon source Crotonic (C) -3.8 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.9 -1.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -2.5 -1.5 compare
pH pH 9 -2.5 -1.5 compare
nitrogen source nitrate (N) -2.5 -2.2 compare
carbon source D-Glucose (C) -2.5 -2.1 compare
stress Growth with Chloride 200 mM -2.5 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.4 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.3 -1.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.3 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.3 -1.7 compare
nitrogen source D-2-Aminobutyric (N) -2.3 -1.3 compare
carbon source L-tyrosine 5 mM (C) -2.1 -2.5 compare
temperature shift Temperature shift 30_to_10; with MOPS -2.0 -1.0 compare
carbon source ferulate (C); with MOPS -1.9 -1.5 compare
pH Growth at pH9 and (C) Trisodium citrate -1.9 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +2.2 +1.3 compare