Fitness data for PP_2064 in Pseudomonas putida KT2440

Multidrug efflux RND membrane fusion protein
SEED: Probable Co/Zn/Cd efflux system membrane fusion protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. putida Sci Big MOI 0.1 -0.8 -1.6 compare
nitrogen source Propandiamine (N) -0.8 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -3.1 compare
nitrogen source Urea (N) -0.6 -2.2 compare
nitrogen source nitrogen source nitrite 0.5mM -0.6 -2.0 compare
phage P. putida Sci small MOI 0.1 -0.6 -1.4 compare
temperature Growth at 25C -0.6 -1.6 compare
pH Growth at pH9 and (C) Trisodium citrate -0.5 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -2.7 compare
carbon source Tween 20 (C) -0.5 -1.6 compare
nitrogen source 2,6-diaminopimelic (N) -0.5 -1.2 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay -0.5 -2.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -2.2 compare
stress Growth with Chloride 200 mM; with MOPS -0.4 -1.6 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.4 -1.8 compare
carbon source D-Glucose (C); with MOPS +0.4 +1.8 compare
carbon source butyrate (C) +0.4 +1.9 compare
nitrogen source Ammonium chloride and TNT (N) +0.4 +2.5 compare
nitrogen source D-2-Aminobutyric (N) +0.6 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +1.0 +1.8 compare