Fitness data for PP_1954 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Beta-lactamase class C and other penicillin binding proteins

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.4 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.2 compare
nitrogen source Urea (N) -0.4 -2.3 compare
carbon source L-Lysine (C) -0.3 -1.9 compare
carbon source carbon source 4-vinylphenol 0.01 mM -0.3 -1.8 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.3 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.7 compare
pH Growth at pH6 and (C) Trisodium citrate +0.3 +1.9 compare
carbon source Delta-Decalactone (C) +0.3 +2.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.4 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.6 compare
carbon source ferulate (C); with MOPS +0.4 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +1.8 compare
phage P. putida Sci small MOI 0.1 +0.4 +2.0 compare
phage P. putida Sci Big MOI 0.1 +0.4 +2.7 compare
phage P. putida PUT 7 MOI 1 +0.6 +3.8 compare
phage P. putida Missley MOI 0.1 +0.7 +3.8 compare
phage P. putida Sci small MOI 0.1 +0.7 +3.2 compare