Fitness data for PP_1755 in Pseudomonas putida KT2440

fumarate hydratase (class 2)
SEED: Fumarate hydratase class II (EC 4.2.1.2)
KEGG: fumarate hydratase, class II

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 -3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9 -2.5 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.7 -2.2 compare
carbon source ferulate (C); with MOPS -0.7 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6 -3.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 +2.1 compare
carbon source Valerolactone (C) +0.7 +2.4 compare
pH Growth at pH6 and (C) D-Glucose +0.7 +2.4 compare
carbon source carbon source Bisabolol 45 mM +0.7 +2.8 compare
pH pH 6 +0.7 +2.4 compare
carbon source Lignin Monomers (C) +0.7 +4.0 compare
pH pH 5 +0.7 +2.1 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.7 +1.9 compare
carbon source carbon source Bisabolene 48.9 mM +0.7 +2.5 compare
pH pH 8 +0.7 +3.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.6 compare
pH pH 9 +0.9 +2.9 compare