Fitness data for PP_1588 in Pseudomonas putida KT2440

N-succinyl-L,L-diaminopimelate aminotransferase alternative
SEED: N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17)
KEGG: N-succinyldiaminopimelate aminotransferase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
pH Growth at pH6 and (C) D-Glucose -0.9 -2.5 compare
carbon source Valerolactam 10 mM (C) -0.7 -3.6 compare
carbon source ferulate (C); with MOPS -0.7 -2.3 compare
carbon source Myristic (C) -0.6 -1.7 compare
carbon source 5-Aminovaleric 10 mM (C) -0.6 -2.6 compare
nitrogen source D-2-Aminobutyric (N) -0.6 -2.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6 -2.4 compare
nitrogen source Ammonium chloride (N) -0.6 -2.2 compare
carbon source benzoic (C) -0.6 -3.3 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.5 -2.4 compare
nitrogen source Propandiamine (N) -0.5 -2.0 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.5 -2.3 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.5 -1.7 compare
nitrogen source DL-2-Aminobutyric (N) -0.5 -3.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5 +1.8 compare
stress Growth with Chloride 500 mM; with MOPS +0.5 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.6 +2.3 compare
phage P. putida Sci small MOI 0.1 +0.7 +2.8 compare