Fitness data for PP_1475 in Pseudomonas putida KT2440

CAIB/BAIF family protein
SEED: L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16)
KEGG: formyl-CoA transferase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
carbon source carbon source D-Glucose 55.5 mM -1.2 -3.3 compare
carbon source 4-Aminobutyric 10 mM (C) -1.1 -2.4 compare
phage P. putida Sci Big MOI 0.1 -1.0 -2.3 compare
phage P. putida Sci small MOI 0.1 -1.0 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8 -2.6 compare
carbon source Valeric (C) -0.8 -2.8 compare
carbon source Valerolactone (C) -0.7 -1.8 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.7 -1.7 compare
temperature Growth at 25C -0.7 -1.2 compare
stress R2A with Fusaric 120 ug/mL -0.7 -2.7 compare
carbon source Lignin Monomers (C) +0.7 +1.5 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.7 +2.4 compare
carbon source acetate (C) +0.7 +1.6 compare
temperature shift Temperature shift 10_to_30 +0.7 +3.4 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.7 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.8 +1.9 compare
carbon source Lignin Monomers (C) +0.8 +1.6 compare
temperature shift Temperature shift 30_to_25 +0.9 +3.5 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +4.9 compare