Fitness data for PP_1468 in Pseudomonas putida KT2440

Tyrosine recombinase XerD
KEGG: integrase/recombinase XerD

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 3.2)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -6.0 -2.9 compare
pH Growth at pH8 and (C) Trisodium citrate -5.5 -3.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -5.5 -3.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -5.5 -3.1 compare
carbon source D-Glucose (C); with MOPS -5.4 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -5.4 -3.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -4.5 -4.2 compare
stress Growth with Chloride 200 mM -4.2 -2.7 compare
carbon source Lignin Monomers (C) -3.7 -3.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.7 -4.4 compare
carbon source Delta-Dodecalactone (C) -3.6 -3.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.6 -4.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -3.5 -2.4 compare
carbon source Delta-Undecalactone (C) -3.4 -3.0 compare
stress Growth with Chloride 500 mM; with MOPS -3.4 -2.5 compare
carbon source Butyl stearate (C) -3.3 -4.5 compare
carbon source 4-Methyl-2-oxopentanoic (C) -3.3 -3.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.2 -3.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -3.2 -3.7 compare
carbon source Trisodium citrate (C) -3.2 -2.3 compare