Fitness data for PP_1410 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: DNA or RNA helicases of superfamily II

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.4)


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group condition fitness t score  
micoeukaryotes Tetrahymena sp., Mixed culture-2 -5.6 -1.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -5.2 -1.3 compare
pH Growth at pH6 and (C) D-Glucose -4.4 -1.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.3 -1.2 compare
nitrogen source Propandiamine (N) -4.3 -1.2 compare
nitrogen source NAG (N); with MOPS -4.3 -0.8 compare
temperature shift Temperature shift 30_to_34; with MOPS -4.3 -1.2 compare
carbon source ferulate (C); with MOPS -4.0 -0.8 compare
phage P. putida Sci small MOI 0.1 -3.7 -1.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -3.4 -1.4 compare
nitrogen source 2,6-diaminopimelic (N) -3.3 -1.0 compare
phage P. putida Missley MOI 0.1 -3.1 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.8 -1.1 compare
phage P. putida Sci Big MOI 0.1 -2.8 -1.2 compare
pH Growth at pH8 and (C) Trisodium citrate -2.8 -1.1 compare
pH Growth at pH7 and (C) Trisodium citrate -2.7 -0.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.6 -1.2 compare
micoeukaryotes C.elegans, mixed culture-2 -2.4 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.9 +4.4 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +3.4 +6.4 compare