Fitness data for PP_1393 in Pseudomonas putida KT2440

putative transcriptional regulator
SEED: Glycine cleavage system transcriptional activator
KEGG: LysR family transcriptional regulator, glycine cleavage system transcriptional activator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source L-Arginine (C) -1.4 -7.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.8 -3.4 compare
phage P. putida Sci Big MOI 0.1 -0.8 -2.3 compare
phage P. putida Sci small MOI 0.1 -0.8 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -3.5 compare
carbon source acetate (C) -0.7 -1.8 compare
carbon source Tween 20 (C) -0.6 -2.1 compare
nitrogen source NAG (N); with MOPS -0.6 -1.6 compare
no stress control Growth with no stress -0.6 -2.4 compare
carbon source Tween 20 (C) -0.5 -1.8 compare
pH Growth at pH8 and (C) D-Glucose -0.5 -1.1 compare
temperature shift Temperature shift 30_to_4 -0.5 -2.5 compare
carbon source Oleic (C) -0.5 -2.2 compare
nitrogen source Hippuric (N) -0.5 -2.0 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.5 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +2.0 compare
nitrogen source D-2-Aminobutyric (N) +0.5 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.6 compare
carbon source Myristic (C) +0.6 +2.4 compare
nitrogen source nitrate (N) +0.6 +2.6 compare