Fitness data for PP_1308 in Pseudomonas putida KT2440

methionine gamma-lyase
SEED: Methionine gamma-lyase (EC 4.4.1.11)
KEGG: methionine-gamma-lyase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source L-Methionine (N) -1.2 -7.7 compare
nitrogen source L-Methionine (N) -1.2 -8.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.7 compare
temperature shift Temperature shift 30_to_34; with MOPS -0.4 -1.7 compare
nitrogen source nitrogen source nitrite 0.5mM -0.4 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -1.3 compare
phage P. putida South MOI 0.1 -0.4 -2.0 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.4 -1.7 compare
pH Growth at pH7 and (C) D-Glucose +0.4 +1.2 compare
carbon source ferulate (C); with MOPS +0.4 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +0.8 compare
pH Growth at pH7 and (C) Trisodium citrate +0.4 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.7 compare
nitrogen source Urea (N) +0.4 +1.9 compare
stress Growth with Chloride 200 mM +0.4 +1.9 compare
pH D-Glucose (C) pH 6 +0.5 +2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.7 +3.3 compare
nitrogen source D-2-Aminobutyric (N) +0.7 +3.0 compare