Fitness data for PP_1258 in Pseudomonas putida KT2440

4-hydroxyproline epimerase
SEED: 4-hydroxyproline epimerase (EC 5.1.1.8)
KEGG: 4-hydroxyproline epimerase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source Hydroxy-L-Proline (C) -7.0 -6.8 compare
carbon source Hydroxy-L-Proline (C) -6.9 -6.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 -2.3 compare
phage P. putida Sci Big MOI 0.1 -0.9 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.9 -2.0 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. -0.8 -3.5 compare
carbon source Valerolactone (C) -0.8 -2.7 compare
phage PUT 8 MOI 1 -0.8 -1.4 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.8 -2.2 compare
pH Growth at pH9 and (C) Trisodium citrate -0.8 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -2.5 compare
carbon source Ethyl decanoate (C) -0.7 -2.4 compare
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.7 -3.0 compare
carbon source Ethyl decanoate and D-Glucose (C)s -0.6 -2.6 compare
phage PUT8 MOI 0.1 +0.6 +2.5 compare
carbon source 1,3-Butandiol (C) +0.7 +2.2 compare
no stress control Growth with no stress +0.7 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.8 +2.0 compare