Fitness data for PP_1255 in Pseudomonas putida KT2440

putative cis-4-hydroxy-D-proline oxidase
SEED: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
KEGG: D-amino-acid dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
carbon source Hydroxy-L-Proline (C) -8.6 -6.0 compare
carbon source Hydroxy-L-Proline (C) -8.5 -5.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.1 -1.4 compare
pH Growth at pH6 and (C) Trisodium citrate -1.5 -2.3 compare
phage P. putida Sci small MOI 0.1 -1.3 -1.5 compare
phage P. putida Sci Big MOI 0.1 -1.2 -1.4 compare
pH Growth at pH6 and (C) D-Glucose -1.2 -1.9 compare
nitrogen source D-2-Aminobutyric (N) -1.0 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.0 -1.3 compare
nitrogen source Urea (N); with MOPS -1.0 -1.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 -2.2 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.0 -2.4 compare
phage P. putida PUT10 MOI 0.1 -1.0 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -1.8 compare
carbon source Trisodium citrate (C) -0.9 -1.2 compare
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.9 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 -1.9 compare
carbon source D-Glucose (C); with MOPS +0.9 +1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.0 +2.8 compare
nitrogen source 2,6-diaminopimelic (N) +1.2 +1.6 compare