Fitness data for PP_1236 in Pseudomonas putida KT2440

putative Glycine cleavage system transcriptional repressor
SEED: Glycine cleavage system transcriptional antiactivator GcvR
KEGG: glycine cleavage system transcriptional repressor

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.0)


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group condition fitness t score  
carbon source L-Lysine 10 mM (C) -1.7 -5.7 compare
nitrogen source Propiolactam (N) -1.6 -4.3 compare
carbon source Vanillin (C) -1.3 -5.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.0 -3.1 compare
carbon source L-Lysine (C) -1.0 -2.3 compare
carbon source 3-methyl-1-butanol (C) -1.0 -4.2 compare
carbon source 3-methyl-1-butanol (C) -1.0 -3.5 compare
carbon source Delta-Undecalactone (C) +1.0 +5.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.1 +3.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.2 +3.0 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 +4.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 +3.8 compare
nitrogen source D-2-Aminobutyric (N) +1.3 +3.3 compare
nitrogen source DL-2-Aminobutyric (N) +1.4 +6.4 compare
nitrogen source DL-2-Aminobutyric (N) +1.4 +7.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.5 +5.1 compare
nitrogen source 2,6-diaminopimelic (N) +1.6 +3.7 compare
nitrogen source D-2-Aminobutyric (N) +1.9 +4.1 compare
carbon source 4-Hydroxyvalerate (C) (40mM) +2.2 +13.9 compare
carbon source 4-Hydroxyvalerate (C) (40mM) +2.6 +16.2 compare