Fitness data for PP_1225 in Pseudomonas putida KT2440

7-carboxy-7-deazaguanine synthase
SEED: Queuosine Biosynthesis QueE Radical SAM
KEGG: queuosine biosynthesis protein QueE

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
carbon source ferulate (C); with MOPS -1.3 -2.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.2 -3.2 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 -2.6 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 -3.2 compare
no phage control Time6-nophage -1.1 -3.5 compare
carbon source L-Leucine (C) -1.0 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -2.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -3.0 compare
phage P. put South MOI 0.1 +0.9 +4.1 compare
carbon source Tween 20 (C) +0.9 +3.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.0 +2.3 compare
phage PUT8 MOI 0.1 +1.0 +3.9 compare
phage P. putida PUT10 MOI 1 +1.0 +4.5 compare
phage PUT 8 MOI 1 +1.0 +2.7 compare
nitrogen source Ammonium chloride (N); with MOPS +1.1 +3.1 compare
phage P. putida PUT10 MOI 0.1 +1.1 +5.0 compare
phage P. putida South MOI 0.1 +1.1 +3.9 compare
phage P. putida PUT10 MOI 0.1 +1.1 +4.2 compare
phage PUT8 MOI 0.1 +1.2 +4.6 compare
phage P. putida South MOI 1 +1.2 +4.0 compare