Fitness data for PP_1217 in Pseudomonas putida KT2440

Holliday junction ATP-dependent DNA helicase RuvB
SEED: Holliday junction DNA helicase RuvB
KEGG: holliday junction DNA helicase RuvB

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.6)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -4.0 -6.1 compare
nitrogen source nitrogen source Ammonium chloride 20mM -3.6 -9.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.3 -6.4 compare
stress R2A with Fusaric 480 ug/mL -3.1 -6.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.1 -6.9 compare
stress Growth with Chloride 500 mM; with MOPS -3.0 -6.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.0 -5.3 compare
nitrogen source DL-2-Aminobutyric (N) -2.9 -5.6 compare
carbon source 3-methyl-1-butanol (C) -2.9 -4.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.9 -6.4 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) -2.9 -5.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -2.8 -6.1 compare
carbon source ferulate (C); with MOPS -2.7 -5.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -2.7 -4.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.7 -4.6 compare
nitrogen source nitrite (N) -2.7 -3.7 compare
nitrogen source D-Lysine (N) -2.7 -5.7 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) -2.6 -5.0 compare
stress R2A with Fusaric 480 ug/mL -2.6 -5.5 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +2.6 +3.0 compare