Fitness data for PP_1168 in Pseudomonas putida KT2440

D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data)
Original annotation: putative TRAP dicarboxylate transporter, DctQ subunit
SEED: TRAP-type C4-dicarboxylate transport system, small permease component

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
carbon source D-Galacturonic Acid (C) -5.4 -3.8 compare
carbon source D-Galacturonic Acid (C) -5.0 -5.9 compare
carbon source D-Glucuronic gamma lactone (C) -4.8 -6.6 compare
carbon source D-Glucuronic gamma lactone (C) -4.7 -7.2 compare
carbon source D-Glucuronic Acid (C) -2.8 -8.0 compare
carbon source Rhamnogalacturonan - from potato (C) -1.7 -6.2 compare
carbon source Rhamnogalacturonan - from potato (C) -1.4 -4.3 compare
carbon source carbon source D-Glucose 55.5 mM -1.2 -3.0 compare
nitrogen source D-2-Aminobutyric (N) -0.8 -2.0 compare
nitrogen source Hippuric (N) -0.8 -3.2 compare
phage P. putida Sci small MOI 0.1 -0.8 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8 -2.0 compare
pH Valerolactone (C) pH 6.5 -0.7 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.7 -2.3 compare
carbon source Valeric (C) -0.7 -1.8 compare
pH Growth at pH7 and (C) Trisodium citrate +0.7 +2.4 compare
phage P. putida Missley MOI 0.1 +0.7 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +2.5 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +2.3 compare
nitrogen source NAG (N); with MOPS +0.8 +2.4 compare