Fitness data for PP_1090 in Pseudomonas putida KT2440

putative Virulence factors positive transcription regulator BvgA
SEED: DNA-binding response regulator, LuxR family
KEGG: two-component system, NarL family, response regulator EvgA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. putida PUT 7 MOI 1 -0.8 -3.3 compare
stress Growth with Chloride 500 mM; with MOPS -0.6 -2.8 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.5 -2.2 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM -0.4 -2.5 compare
phage P. putida Sci small MOI 0.1 -0.4 -1.4 compare
carbon source ferulate (C); with MOPS -0.4 -1.4 compare
nitrogen source nitrite (N) -0.4 -2.0 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay -0.4 -2.2 compare
pH pH 8 +0.4 +1.9 compare
temperature shift Temperature shift 10_to_30; with MOPS +0.4 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.7 compare
carbon source carbon source 3-O-methyl-glucose 50 mM +0.4 +2.0 compare
carbon source D-Glucose (C) +0.4 +2.1 compare
pH Growth at pH6 and (C) D-Glucose +0.4 +1.8 compare
pH Valerolactone (C) pH 6.5 +0.5 +2.4 compare
pH pH 9 +0.5 +2.2 compare
phage PUT8 MOI 0.1 +0.5 +2.7 compare
phage PUT 8 MOI 1 +0.6 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +2.8 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +2.7 compare