Fitness data for PP_1072 in Pseudomonas putida KT2440

Leucine-rich repeat domain protein
SEED: Leucine-rich repeat domain protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -0.4 -2.3 compare
temperature shift Temperature shift 30_to_25 -0.3 -1.9 compare
carbon source D-Glucose (C); with MOPS -0.3 -1.7 compare
phage P. putida Sci small MOI 0.1 -0.3 -1.6 compare
pH Growth at pH6 and (C) Trisodium citrate -0.3 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -1.5 compare
nitrogen source nitrate (N) -0.2 -1.8 compare
nitrogen source no extra (N); with MOPS -0.2 -1.6 compare
pH Growth at pH9 and (C) D-Glucose -0.2 -1.8 compare
phage P. put PUT 10 MOI 10 -0.2 -1.8 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.2 -1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +1.6 compare
pH pH 4 +0.2 +1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.2 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 +2.1 compare