Fitness data for PP_0873 in Pseudomonas putida KT2440

putrescine-binding periplasmic protein
SEED: Putrescine ABC transporter, periplasmic putrescine-binding protein
KEGG: putrescine transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -2.8 compare
no stress control Growth with no stress -0.4 -2.2 compare
phage P. put South MOI 10 -0.4 -1.9 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.3 -2.2 compare
pH pH 6 -0.3 -1.4 compare
nitrogen source nitrogen source nitrite 0.5mM -0.3 -1.5 compare
phage P. putida South MOI 10 -0.3 -1.6 compare
pH Growth at pH7 and (C) Trisodium citrate -0.3 -1.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.1 compare
temperature shift Temperature shift 10_to_25; with MOPS +0.3 +1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.3 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +1.8 compare
pH Growth at pH9 and (C) Trisodium citrate +0.3 +1.8 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.3 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +1.8 compare
no phage control Time6-nophage +0.4 +2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.4 +2.6 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +2.2 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +2.2 compare