Fitness data for PP_0861 in Pseudomonas putida KT2440

outer membrane ferric siderophore receptor
SEED: Ferrichrome-iron receptor
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 -1.7 compare
anaerobic m9 anaerobic M9 -0.2 -2.0 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay -0.2 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +1.6 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.2 +1.4 compare
pH Growth at pH8 and (C) D-Glucose +0.2 +1.5 compare
carbon source ferulate (C); with MOPS +0.2 +1.4 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.2 +1.7 compare
temperature shift Temperature shift 30_to_10 +0.2 +1.9 compare
stress Butanol 0.6 vol% +0.2 +1.8 compare
pH Growth at pH6 and (C) Trisodium citrate +0.2 +1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.2 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 +1.5 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.2 +1.9 compare
carbon source Nonanoic (C) +0.3 +1.8 compare
carbon source D-Glucose (C) +0.3 +1.8 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.3 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.3 compare