Fitness data for PP_0799 in Pseudomonas putida KT2440

histidine-specific outer membrane porin D
SEED: Outer membrane porin, coexpressed with pyoverdine biosynthesis regulon

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
carbon source 2-Methylbutanoic (C) -0.4 -2.9 compare
phage P. putida Sci Big MOI 0.1 -0.3 -2.2 compare
nitrogen source Urea (N) -0.3 -2.0 compare
carbon source D-Glucose (C) with 20AA_mix_minus_Cys -0.3 -2.1 compare
stress Growth with Chloride 500 mM; with MOPS -0.3 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.3 -1.6 compare
nitrogen source Ammonium chloride (N) -0.2 -1.6 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.2 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -1.7 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.2 -1.5 compare
temperature Growth at 25C -0.2 -1.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +1.3 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +0.2 +1.8 compare
carbon source D-Glucose (C) 10 mM +0.2 +1.9 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +0.3 +2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.3 +1.9 compare
carbon source Tween 20 (C) +0.3 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +2.0 compare
phage P. putida South MOI 10 +0.3 +2.1 compare