Fitness data for PP_0770 in Pseudomonas putida KT2440

PemI-like protein
SEED: Programmed cell death antitoxin ChpS

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.0 -2.5 compare
phage P. put PUT 10 MOI 0.1 -1.8 -4.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.6 -2.2 compare
carbon source L-Leucine (C) -1.5 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.3 -3.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.3 -3.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 -1.2 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -1.1 -2.1 compare
phage P. put South MOI 10 -1.1 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0 -2.1 compare
carbon source 1,3-Butandiol (C) -0.9 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9 -1.4 compare
carbon source L-Glutamic (C) -0.9 -3.0 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.9 +1.7 compare
reactor_pregrowth Adaptation in M9 media timecourse 4; day 2 +1.0 +4.2 compare
temperature Growth at 25C; with MOPS +1.0 +3.6 compare
temperature shift Temperature shift 30_to_21; with MOPS +1.0 +1.4 compare
pH Growth at pH6 and (C) D-Glucose +1.1 +2.1 compare
carbon source Trisodium citrate (C) +1.1 +2.4 compare
stress Growth with Chloride 500 mM; with MOPS +1.1 +3.3 compare