Fitness data for PP_0748 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Tryptophan synthase beta chain like (EC 4.2.1.20)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.0 -2.2 compare
pH pH 8 -0.7 -2.3 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.7 -3.6 compare
carbon source 1,3-Butandiol (C) -0.7 -2.1 compare
nitrogen source nitrogen source nitrate 5mM -0.6 -2.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -2.6 compare
stress R2A with Fusaric 480 ug/mL -0.6 -2.9 compare
pH Growth at pH8 and (C) D-Glucose -0.6 -2.9 compare
phage P. putida Sci small MOI 0.1 -0.6 -1.6 compare
lb outgrowth control more dilute start LB outgrowth control more dilute start -0.5 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -2.1 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. -0.5 -2.4 compare
nitrogen source Urea (N) -0.5 -1.4 compare
carbon source Myristic (C) -0.5 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +2.4 compare
nitrogen source D-2-Aminobutyric (N) +0.6 +1.8 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.8 +2.2 compare