Fitness data for PP_0698 in Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: D-serine dehydratase transcriptional activator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9 -2.4 compare
pH Growth at pH9 and (C) Trisodium citrate -0.8 -1.5 compare
pH Growth at pH7 and (C) Trisodium citrate -0.8 -1.7 compare
pH Growth at pH6 and (C) D-Glucose -0.8 -1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -2.2 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.7 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -3.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.6 -1.4 compare
temperature Growth at 25C -0.6 -1.6 compare
stress Growth with Chloride 500 mM; with MOPS -0.6 -2.0 compare
pH Valerolactone (C) pH 6.5 -0.6 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.3 compare
carbon source carbon source D-Glucose 55.5 mM -0.5 -1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.9 compare
carbon source D-Lysine 10 mM (C) -0.5 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.5 +2.9 compare
nitrogen source D-2-Aminobutyric (N) +0.6 +1.7 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.6 +2.7 compare
nitrogen source 2,6-diaminopimelic (N) +0.7 +2.3 compare