Fitness data for PP_0686 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Alkylphosphonate utilization operon protein PhnA
KEGG: phosphonoacetate hydrolase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -0.6 -1.9 compare
pH Valerolactone (C) pH 6.5 -0.6 -1.9 compare
carbon source ferulate (C); with MOPS -0.5 -1.6 compare
stress R2A with Fusaric 480 ug/mL -0.5 -2.3 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.5 -2.1 compare
pH pH 4 -0.4 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.4 -2.1 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.4 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +1.1 compare
temperature shift Temperature shift 30_to_4; with MOPS +0.4 +2.2 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay +0.4 +2.4 compare
temperature shift Temperature shift 10_to_30; with MOPS +0.4 +2.1 compare
stress Growth with Chloride 200 mM; with MOPS +0.4 +2.3 compare
nitrogen source nitrate (N) +0.4 +1.8 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.6 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.6 +2.0 compare