Fitness data for PP_0645 in Pseudomonas putida KT2440

protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.7 -2.2 compare
nitrogen source nitrate (N) -0.6 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 -2.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.5 compare
carbon source L-Leucine (C) -0.5 -1.8 compare
nitrogen source Ammonium chloride (N) -0.5 -1.8 compare
pH Growth at pH7 and (C) Trisodium citrate -0.5 -1.7 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -2.8 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.4 -2.0 compare
carbon source 1,3-Hexanediol (C) -0.4 -2.0 compare
stress R2A with Fusaric 240 ug/mL +0.4 +2.2 compare
temperature shift Temperature shift 10_to_25; with MOPS +0.4 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4 +2.2 compare
carbon source 3-Hydroxydecanoic (C) +0.4 +2.3 compare
carbon source 2,3-Butanediol (C) +0.4 +2.3 compare
carbon source 4-Aminobutyric 10 mM (C) +0.5 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.4 compare
nitrogen source 2,6-diaminopimelic (N) +0.7 +2.5 compare