Fitness data for PP_0607 in Pseudomonas putida KT2440

putative Type IV pili biogenesis protein FimT
SEED: Type IV fimbrial biogenesis protein FimT
KEGG: type IV fimbrial biogenesis protein FimT

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.2)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -3.6 -2.2 compare
pH Valerolactone (C) pH 6.5 -2.2 -2.1 compare
carbon source D-Glucose (C) -2.1 -1.9 compare
carbon source 1,3-Butandiol (C) -1.9 -1.1 compare
nitrogen source Ammonium chloride (N) -1.9 -1.0 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -1.9 -1.5 compare
nitrogen source D-2-Aminobutyric (N) -1.6 -0.9 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 -2.7 compare
phage P. putida PUT10 MOI 10 -1.6 -4.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.5 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 -1.6 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -1.4 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.4 -2.0 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM -1.4 -3.2 compare
nitrogen source Urea (N) -1.4 -0.8 compare
carbon source D-Fructose (C) -1.3 -3.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.3 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.3 -2.2 compare
temperature shift Temperature shift 30_to_10; with MOPS -1.3 -1.7 compare
pH pH 8 -1.2 -1.9 compare