Fitness data for PP_0361 in Pseudomonas putida KT2440

putative Competence protein ComF
SEED: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
phage PUT 8 MOI 1 -2.2 -1.8 compare
carbon source 1,3-Butandiol (C) -1.4 -1.3 compare
carbon source 3-Hydroxydecanoic (C) -1.2 -2.5 compare
phage P. putida Sci small MOI 0.1 -1.1 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.1 -1.6 compare
carbon source D-Glucose (C) -1.0 -0.8 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.0 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.0 -2.8 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay -1.0 -2.4 compare
pH Growth at pH6 and (C) D-Glucose -0.9 -1.8 compare
carbon source Lauric (C) -0.8 -1.6 compare
nitrogen source Urea (N); with MOPS -0.8 -1.2 compare
carbon source Tween 20 (C) -0.8 -0.8 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.8 -1.8 compare
phage P. putida PUT 7 MOI 1 -0.8 -1.6 compare
carbon source ferulate (C); with MOPS -0.8 -1.3 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.8 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +1.7 compare
carbon source carbon source Glycerol 108.6 mM +1.0 +1.7 compare