Fitness data for PP_0305 in Pseudomonas putida KT2440

HTH-type transcriptional regulator CdhR
SEED: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
nitrogen source Carnitine Hydrochloride (N) -2.6 -6.6 compare
nitrogen source Carnitine Hydrochloride (N) -2.4 -6.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.1 -2.6 compare
carbon source D-Glucose (C) -2.1 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.9 -1.4 compare
carbon source acetate (C) -1.6 -2.6 compare
pH pH 6 -1.5 -2.7 compare
nitrogen source nitrogen source nitrate 5mM -1.2 -1.8 compare
carbon source carbon source Bisabolene 48.9 mM -1.1 -2.6 compare
pH Growth at pH6 and (C) D-Glucose -1.1 -1.8 compare
stress Growth with Chloride 500 mM -1.1 -3.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.0 -3.4 compare
nitrogen source 2,6-diaminopimelic (N) -1.0 -1.9 compare
pH Growth at pH7 and (C) Trisodium citrate -1.0 -0.8 compare
carbon source D-Glucose (C); with MOPS -1.0 -1.6 compare
nitrogen source D-2-Aminobutyric (N) -0.9 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.9 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.9 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.9 +1.7 compare