Fitness data for PP_0302 in Pseudomonas putida KT2440

L-carnitine 3-dehydrogenase (EC 1.1.1.108) (from data)
Original annotation: L-carnitine dehydrogenase
KEGG: 3-hydroxybutyryl-CoA dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source Carnitine Hydrochloride (N) -2.9 -12.4 compare
nitrogen source Carnitine Hydrochloride (N) -2.9 -13.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 -1.7 compare
pH Growth at pH7 and (C) Trisodium citrate -0.6 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -1.8 compare
carbon source L-Phenylalanine 5 mM (C) -0.4 -2.2 compare
carbon source acetate (C) -0.4 -1.3 compare
carbon source Sebacic (C) -0.4 -2.2 compare
carbon source L-Leucine (C) -0.4 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +2.1 compare
nitrogen source Propiolactam (N) +0.4 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +1.5 compare
nitrogen source nitrate (N) +0.4 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +1.7 compare
carbon source 2,3-Butanediol (C) +0.4 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.0 compare
phage P. putida PUT 7 MOI 1 +0.4 +1.8 compare
pH pH 8 +0.4 +1.9 compare
mixed community control Putida_ML5X alone +0.5 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +2.7 compare