Fitness data for PP_0185 in Pseudomonas putida KT2440

Positive alginate biosynthesis regulatory protein
SEED: Autolysis response regulater LytR
KEGG: two-component system, LytT family, response regulator AlgR

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.2)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -3.6 -10.7 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -3.4 -9.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.9 -11.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.9 -8.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.6 -10.6 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -2.5 -8.2 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.5 -8.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.4 -6.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.4 -8.6 compare
carbon source L-Glutamic (C) -2.4 -9.4 compare
nitrogen source D-2-Aminobutyric (N) -2.3 -6.5 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -2.3 -7.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.2 -4.8 compare
carbon source 1,4-Butanediol (C) -2.2 -7.4 compare
carbon source L-Leucine (C) +2.2 +14.9 compare
carbon source Delta-Nonalactone (C) +2.2 +15.0 compare
carbon source L-Leucine (C) +2.2 +17.2 compare
carbon source Delta-Decalactone (C) +2.3 +13.8 compare
carbon source Delta-Decalactone (C) +2.5 +15.6 compare
carbon source L-Leucine (C) +3.0 +18.8 compare