Fitness data for PP_0110 in Pseudomonas putida KT2440

CyoE like protoheme IX farnesyltransferase
SEED: Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone
KEGG: protoheme IX farnesyltransferase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
pH Growth at pH6 and (C) D-Glucose -1.0 -2.2 compare
pH pH 6 -0.6 -2.6 compare
nitrogen source Ammonium chloride (N); with MOPS -0.6 -2.8 compare
temperature Growth at 25C; with MOPS -0.5 -2.0 compare
pH Growth at pH6 and (C) D-Glucose -0.5 -1.2 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.5 -2.5 compare
phage P. putida PUT10 MOI 1 -0.5 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 -1.7 compare
nitrogen source no extra (N); with MOPS -0.5 -2.1 compare
temperature shift Temperature shift 10_to_25; with MOPS -0.5 -1.6 compare
stress Growth with Chloride 500 mM; with MOPS -0.5 -1.9 compare
phage P. putida PUT10 MOI 10 -0.5 -3.0 compare
nitrogen source Ammonium chloride (N) -0.4 -1.7 compare
pH Growth at pH6 and (C) D-Glucose -0.4 -1.5 compare
pH Valerolactone (C) pH 6.5 -0.4 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.8 compare
pH Growth at pH7 and (C) D-Glucose +0.4 +1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.5 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5 +2.0 compare