Fitness data for PP_0079 in Pseudomonas putida KT2440

putative transcriptional regulator
SEED: Transcriptional regulator, LysR family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source 2,6-diaminopimelic (N) -1.0 -2.9 compare
nitrogen source nitrate (N) -0.7 -2.5 compare
carbon source D-Glucose (C) -0.6 -2.2 compare
phage P. putida PUT 7 MOI 1 -0.6 -2.0 compare
temperature shift Temperature shift 10_to_25; with MOPS -0.5 -1.7 compare
carbon source Trisodium citrate 10 mM (C) -0.5 -2.5 compare
carbon source D-Fructose (C) -0.5 -2.5 compare
carbon source 2,3-Butanediol (C) -0.5 -2.7 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -0.5 -2.5 compare
carbon source DL-3-Hydroxybutyric (C) -0.5 -2.2 compare
pH D-Glucose (C) pH 6.5 -0.4 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -2.2 compare
pH Growth at pH6 and (C) D-Glucose -0.4 -1.2 compare
nitrogen source nitrogen source nitrite 1mM +0.4 +1.6 compare
micoeukaryotes C.elegans, mixed culture-2 +0.4 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.7 compare