Fitness data for PP_0046 in Pseudomonas putida KT2440

tyrosine-specific outer membrane porin D
SEED: Outer membrane porin, OprD family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source Trisodium citrate (C) -0.8 -2.7 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.6 -2.7 compare
pH Growth at pH7 and (C) Trisodium citrate -0.6 -1.7 compare
pH pH 7 -0.5 -2.6 compare
nitrogen source D-2-Aminobutyric (N) -0.5 -2.1 compare
carbon source L-Proline (C) -0.5 -2.6 compare
pH pH 6 -0.4 -2.3 compare
nitrogen source Ammonium chloride (N) -0.4 -2.9 compare
nitrogen source Ammonium chloride (N) -0.4 -2.4 compare
nitrogen source nitrogen source nitrite 0.5mM -0.4 -2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.4 -2.2 compare
phage P. put PUT 10 MOI 1 -0.4 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4 +1.8 compare
nitrogen source Propandiamine (N) +0.5 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +2.8 compare
stress Growth with Chloride 500 mM; with MOPS +0.5 +2.9 compare
no stress control Growth with no stress +0.5 +2.5 compare
carbon source butyrate (C) +0.5 +3.4 compare
temperature shift Temperature shift 30_to_21; with MOPS +0.6 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.3 compare