Fitness data for PP_0012 in Pseudomonas putida KT2440

DNA replication and repair protein
SEED: DNA recombination and repair protein RecF
KEGG: DNA replication and repair protein RecF

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source 3-methyl-1-butanol (C) -1.0 -6.7 compare
carbon source 3-methyl-1-butanol (C) -0.7 -5.1 compare
nitrogen source L-Cysteine (N) -0.7 -4.8 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -3.6 compare
nitrogen source nitrogen source nitrite 0.5mM -0.6 -2.6 compare
pH Growth at pH6 and (C) D-Glucose -0.6 -1.6 compare
carbon source Ethyl decanoate and D-Glucose (C)s -0.6 -3.4 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -2.8 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -2.9 compare
nitrogen source L-Cysteine (N) -0.5 -3.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5 -2.1 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.5 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.3 compare
carbon source Tween 20 (C) -0.5 -1.9 compare
pH pH 5 -0.5 -2.3 compare
nitrogen source Ammonium chloride and TNT (N) -0.5 -3.0 compare
carbon source Octanoic (C) -0.5 -2.4 compare
carbon source Tween 20 (C) -0.5 -1.8 compare
stress Growth with Chloride 500 mM; with MOPS -0.5 -1.9 compare
carbon source carbon source Bisabolene 48.9 mM -0.5 -2.0 compare