Fitness data for PS417_04940 in Pseudomonas simiae WCS417

outer membrane usher protein
SEED: Beta-fimbriae usher protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage JP1 MOI 10 -1.0 -3.0 compare
carbon source L-Valine (C) -1.0 -3.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -2.4 compare
phage P. simiae Grant Run MOI 0.1 -0.6 -2.2 compare
carbon source D-Ribose (C) -0.6 -3.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -2.0 compare
carbon source L-Valine (C) -0.5 -1.0 compare
carbon source D-Gluconic Acid (C) -0.5 -2.6 compare
carbon source D-Trehalose (C) -0.5 -2.4 compare
phage JP1 MOI 10 -0.5 -1.6 compare
phage JP1 MOI 1 -0.5 -1.6 compare
soil soil sample 8; outgrowth in LB -0.5 -1.7 compare
root root sample 6; outgrowth in LB +0.5 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.5 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +2.0 compare
seeds Growth on radish seeds for 72 hours +0.6 +1.5 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +0.7 +1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.8 +3.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.2 +1.7 compare