Fitness data for PS417_04565 in Pseudomonas simiae WCS417

cell envelope biogenesis protein OmpA
SEED: Outer membrane protein assembly factor YaeT precursor

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -2.6 compare
phage JP1 MOI 0.1 -0.7 -2.6 compare
seeds Growth on radish seeds for 24 hours -0.6 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -1.8 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -2.2 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5 -2.0 compare
seeds Growth on radish seeds for 72 hours -0.5 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -2.1 compare
ecofab LB 0.5x in EcoFAB_3.5mL -0.5 -2.4 compare
stress Aluminum chloride 4 mM -0.5 -2.0 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.4 -2.0 compare
carbon source 2-Deoxy-D-Ribose (C) +0.4 +2.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.5 compare
rhizosphere rhizosphere sample 8; outgrowth in LB +0.5 +2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.6 +2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +1.5 compare