Fitness data for PS417_03935 in Pseudomonas simiae WCS417

N-acetyl-anhydromuranmyl-L-alanine amidase
SEED: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD
KEGG: AmpD protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.3)


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group condition fitness t score  
root root sample 6; outgrowth in LB -3.9 -2.7 compare
soil soil sample 6; outgrowth in LB -2.7 -2.7 compare
soil soil sample 8; outgrowth in LB -2.3 -3.0 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -2.3 -2.4 compare
solid stress Fraxetin 3 mM; solid stress -2.1 -2.6 compare
stress Polymyxin B sulfate 0.006 mg/ml -2.0 -4.4 compare
rhizosphere rhizosphere sample 1; outgrowth in LB -1.7 -2.1 compare
supernatant control Vogels_fungal_media 0.1X -1.7 -1.7 compare
phage JP1 MOI 10 -1.6 -2.8 compare
soil soil sample 4; outgrowth in LB -1.6 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 -1.6 compare
seeds Growth on radish seeds for 72 hours -1.4 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 -1.8 compare
stress Phosphomycin 0.003 mg/ml -1.4 -1.7 compare
stress Neomycin 0.04 mg/ml -1.4 -4.1 compare
supernatant control Vogels_fungal_media; pH 5.5 -1.3 -2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.3 -3.1 compare
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X +1.4 +5.1 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x +1.7 +5.5 compare
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X +1.8 +6.5 compare