Fitness data for PS417_03465 in Pseudomonas simiae WCS417

type III secretion protein
SEED: type III secretion protein HrpQ

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.6)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.0 -1.7 compare
carbon source L-Valine (C) -3.6 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -3.3 -1.9 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -2.7 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.6 -1.4 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -2.5 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 -1.3 compare
phage JP1 MOI 0.1 -2.3 -1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.0 -0.9 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.9 -1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 -1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 -1.4 compare
solid stress Scopoletin 2 mM; solid stress -1.8 -2.4 compare
solid stress Scopoletin 0.5 mM; solid stress -1.8 -2.2 compare
soil soil sample 3; outgrowth in LB -1.8 -1.3 compare
rhizosphere rhizosphere sample 1; outgrowth in LB -1.7 -1.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.7 -1.4 compare
liquid stress 80% Methanol 1 mM; liquid stress -1.7 -1.7 compare
carbon source 2-Deoxy-D-ribonic lithium salt (C) -1.6 -2.5 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.8 +1.8 compare